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    Structured Review

    TaKaRa ecori sites
    Ecori Sites, supplied by TaKaRa, used in various techniques. Bioz Stars score: 99/100, based on 15959 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/ecori+site/EcoR+I/pm42092416-72-36-42
    Average 99 stars, based on 15959 article reviews
    ecori sites - by Bioz Stars, 2026-09
    99/100 stars

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    Related Articles

    Clone Assay:

    Article Title: Treatment of atypical hemolytic uremic syndrome and C3 glomerulopathy in mice by hepatic expression of factor D.
    Article Snippet: .. The various FD cDNAs were cloned into the pCAGGS vector 21 at the EcoRI site through the infusion cloning method (kit from Takara). ..

    Article Title: Direct binding of chromosome axis and cohesin complexes underlies meiotic chromosome architecture in fungi and plants
    Article Snippet: For yeast two-hybrid assays with A. thaliana proteins, A. thaliana ASY3 fragments were PCR-amplified and cloned into the NdeI site of pGADT7 (Clontech # 630442) via isothermal assembly to generate activation domain (AD) fusions. .. The SMC1(head) construct (residues 1-181 and 1030-1218 of A. thaliana SMC1 fused by a GSGSASAG linker) was synthesized by IDT and cloned into the EcoRI site of pBridge (Clontech # 630404) via isothermal assembly to generate a binding domain (BD) fusion. ..

    Article Title: Transcriptional adapter ADA2 regulates yield and end-use quality through liquid-liquid phase separation in wheat.
    Article Snippet: .. The full‐length GCN5, along with the introduced mutation and some domain deletions, was cloned into the EcoRI site of the pGBKT7 vector (Takara, Dalian, China), while the full‐length ADA2, along with the introduced mutation and some domain deletions, was cloned into the EcoRI site of the pGADT7 vector (Takara, Dalian, China). .. Different combinations of the plasmids were transformed into yeast strain Y2HGold (WEIDIBIO, YCL1002, Shanghai, China), and the cells were grown on minimal medium (−Leu/−Trp) (Coolaber, PM2222, Beijing, China) at 30°C for 2 d according to the manufacturer's instructions (WEIDIBIO, Shanghai, China).

    Article Title: Direct binding of chromosome axis and cohesin complexes underlies meiotic chromosome architecture in fungi and plants
    Article Snippet: For yeast two-hybrid assays with M. musculus proteins, M. musculus SYCP2 fragments were PCR-amplified and cloned into the NdeI site of pGADT7 (Clontech # 630442) via isothermal assembly to generate activation domain (AD) fusions. .. The SMC1(head) construct (residues 2-169 and 1056-1217 of M. musculus SMC1β fused by a GSGSASAG linker) was synthesized by IDT and cloned into the EcoRI site of pBridge (Clontech # 630404) via isothermal assembly to generate a binding domain (BD) fusion. .. Subsequently, the RAD21L C-WHD domain (residues 457-550) or REC8 C-WHD domain (residues 521-591) was synthesized by IDT and cloned into the BglII site of the same vector. pBridge (BD) and pGADT7 (AD) plasmids were transformed into S. cerevisiae strains Y187 ( MATα ) and AH109 ( MATa ), respectively, and transformants were selected on CSM-TRP (for BD plasmids) and-LEU (for AD plasmids) agar plates at 30°C for 3-5 days.

    Article Title: Treatment of atypical hemolytic uremic syndrome and C3 glomerulopathy in mice by hepatic expression of factor D
    Article Snippet: Human and mouse pro- FD cDNAs were obtained from OriGene (catalog no. SC11950) and Sino Biological (catalog no. MG50539-M), respectively. .. Mature human and mouse FD cDNA was amplified by polymerase chain reaction with the respective pro- FD cDNA as a template., The various FD cDNAs were cloned into the pCAGGS vector at the EcoRI site through the infusion cloning method (kit from Takara). ..

    Plasmid Preparation:

    Article Title: Treatment of atypical hemolytic uremic syndrome and C3 glomerulopathy in mice by hepatic expression of factor D.
    Article Snippet: .. The various FD cDNAs were cloned into the pCAGGS vector 21 at the EcoRI site through the infusion cloning method (kit from Takara). ..

    Article Title: FHL2 fused with biotin ligase shuttles between focal adhesions and the nucleus in a myosin II-dependent manner
    Article Snippet: .. Plasmids: To generate pPB-CAG-FHL2-GFP-BirA construct, FHL2-GFP cDNA (Nakazawa et al. 2016) and BirA cDNA (Guo et al. 2014) were recombined into the EcoRI site in pPB-LR5-Core2-CAG-HA-N1-Core2 plasmid vector using In-Fusion cloning (Takara) (Fujita et al. 2020). ..

    Article Title: Treatment of atypical hemolytic uremic syndrome and C3 glomerulopathy in mice by hepatic expression of factor D
    Article Snippet: Human and mouse pro- FD cDNAs were obtained from OriGene (catalog no. SC11950) and Sino Biological (catalog no. MG50539-M), respectively. .. Mature human and mouse FD cDNA was amplified by polymerase chain reaction with the respective pro- FD cDNA as a template., The various FD cDNAs were cloned into the pCAGGS vector at the EcoRI site through the infusion cloning method (kit from Takara). ..

    Cloning:

    Article Title: Treatment of atypical hemolytic uremic syndrome and C3 glomerulopathy in mice by hepatic expression of factor D.
    Article Snippet: .. The various FD cDNAs were cloned into the pCAGGS vector 21 at the EcoRI site through the infusion cloning method (kit from Takara). ..

    Article Title: Bleb-based extravasation: conserved morphodynamics, divergent calcium control
    Article Snippet: .. The full-length of EGFP was amplified by PCR, and subcloned into the EcoRI-PstI site of pT2A-BItight-TRE. pT2A-BItight-EGFP-TRE-Orai1 E106Q: The ORF of human Orai1 with E106Q mutation and myc tag (addgene #22754) was amplified by PCR, and subcloned into the MluI-EcoRV site of pT2A-BItight-EGFP-TRE. pT2A-BItight-mCherry-TRE: The full-length of mCherry was amplified by PCR, and subcloned into the EcoRI-BglII site of pT2A-BItight-TRE. pT2A-BItight-GCaMP6s-2AP-mCherry-TRE: The consecutive sequences of GCaMP6s-2AP-mCherry was amplified by PCR, and subcloned into the EcoRI site of pT2A-BItight-TRE by In-Fusion ® HD cloning kit (TaKaRa). pT2A-BItight-Lifeact-mCherry-TRE: Lifeact-mCherry was amplified by PCR using pT2A-BI-TRE-LAP2bcGFP-Lifeact-mCherry as a template, and subcloned into the MluI-EcoRV site of pT2A-BItight-TRE. pT2A-CAGGS-EGFP-CAAX-IRES2-PuroR: The sequences of IRES2 and PuroR were amplified by PCR, and subcloned into the XhoI-EcoRI site and EcoRI-BglII site into pT2A-CAGGS, respectively. ..

    Article Title: H3.3 G34R-engineered murine glioma reproduces diffuse perineuronal infiltration of diffuse hemispheric glioma, H3 G34-mutant.
    Article Snippet: A plasmid containing the fully sequenced mouse H3f3a cDNA (Accession: BC106177, Clone ID: 6511787) was purchased from GE Healthcare Dharmacon Inc. Site-directed mutagenesis was performed using primers incorporating the H3f3a-G34R mutation (GGG→CGG: Gly (G)→Arg(R; Fig. 1A). .. The mutant cDNA was amplified by PCR and ligated into the EcoRI site using the InFusion HD cloning kit (Clontech) according to the manufacturer's instructions. .. Male BALB/c nude mice (6–8 weeks old) were purchased from Charles River Japan (Yokohama, Japan).

    Article Title: FHL2 fused with biotin ligase shuttles between focal adhesions and the nucleus in a myosin II-dependent manner
    Article Snippet: .. Plasmids: To generate pPB-CAG-FHL2-GFP-BirA construct, FHL2-GFP cDNA (Nakazawa et al. 2016) and BirA cDNA (Guo et al. 2014) were recombined into the EcoRI site in pPB-LR5-Core2-CAG-HA-N1-Core2 plasmid vector using In-Fusion cloning (Takara) (Fujita et al. 2020). ..

    Article Title: Treatment of atypical hemolytic uremic syndrome and C3 glomerulopathy in mice by hepatic expression of factor D
    Article Snippet: Human and mouse pro- FD cDNAs were obtained from OriGene (catalog no. SC11950) and Sino Biological (catalog no. MG50539-M), respectively. .. Mature human and mouse FD cDNA was amplified by polymerase chain reaction with the respective pro- FD cDNA as a template., The various FD cDNAs were cloned into the pCAGGS vector at the EcoRI site through the infusion cloning method (kit from Takara). ..

    Amplification:

    Article Title: Bleb-based extravasation: conserved morphodynamics, divergent calcium control
    Article Snippet: .. The full-length of EGFP was amplified by PCR, and subcloned into the EcoRI-PstI site of pT2A-BItight-TRE. pT2A-BItight-EGFP-TRE-Orai1 E106Q: The ORF of human Orai1 with E106Q mutation and myc tag (addgene #22754) was amplified by PCR, and subcloned into the MluI-EcoRV site of pT2A-BItight-EGFP-TRE. pT2A-BItight-mCherry-TRE: The full-length of mCherry was amplified by PCR, and subcloned into the EcoRI-BglII site of pT2A-BItight-TRE. pT2A-BItight-GCaMP6s-2AP-mCherry-TRE: The consecutive sequences of GCaMP6s-2AP-mCherry was amplified by PCR, and subcloned into the EcoRI site of pT2A-BItight-TRE by In-Fusion ® HD cloning kit (TaKaRa). pT2A-BItight-Lifeact-mCherry-TRE: Lifeact-mCherry was amplified by PCR using pT2A-BI-TRE-LAP2bcGFP-Lifeact-mCherry as a template, and subcloned into the MluI-EcoRV site of pT2A-BItight-TRE. pT2A-CAGGS-EGFP-CAAX-IRES2-PuroR: The sequences of IRES2 and PuroR were amplified by PCR, and subcloned into the XhoI-EcoRI site and EcoRI-BglII site into pT2A-CAGGS, respectively. ..

    Article Title: H3.3 G34R-engineered murine glioma reproduces diffuse perineuronal infiltration of diffuse hemispheric glioma, H3 G34-mutant.
    Article Snippet: A plasmid containing the fully sequenced mouse H3f3a cDNA (Accession: BC106177, Clone ID: 6511787) was purchased from GE Healthcare Dharmacon Inc. Site-directed mutagenesis was performed using primers incorporating the H3f3a-G34R mutation (GGG→CGG: Gly (G)→Arg(R; Fig. 1A). .. The mutant cDNA was amplified by PCR and ligated into the EcoRI site using the InFusion HD cloning kit (Clontech) according to the manufacturer's instructions. .. Male BALB/c nude mice (6–8 weeks old) were purchased from Charles River Japan (Yokohama, Japan).

    Article Title: Treatment of atypical hemolytic uremic syndrome and C3 glomerulopathy in mice by hepatic expression of factor D
    Article Snippet: Human and mouse pro- FD cDNAs were obtained from OriGene (catalog no. SC11950) and Sino Biological (catalog no. MG50539-M), respectively. .. Mature human and mouse FD cDNA was amplified by polymerase chain reaction with the respective pro- FD cDNA as a template., The various FD cDNAs were cloned into the pCAGGS vector at the EcoRI site through the infusion cloning method (kit from Takara). ..

    Polymerase Chain Reaction:

    Article Title: Bleb-based extravasation: conserved morphodynamics, divergent calcium control
    Article Snippet: .. The full-length of EGFP was amplified by PCR, and subcloned into the EcoRI-PstI site of pT2A-BItight-TRE. pT2A-BItight-EGFP-TRE-Orai1 E106Q: The ORF of human Orai1 with E106Q mutation and myc tag (addgene #22754) was amplified by PCR, and subcloned into the MluI-EcoRV site of pT2A-BItight-EGFP-TRE. pT2A-BItight-mCherry-TRE: The full-length of mCherry was amplified by PCR, and subcloned into the EcoRI-BglII site of pT2A-BItight-TRE. pT2A-BItight-GCaMP6s-2AP-mCherry-TRE: The consecutive sequences of GCaMP6s-2AP-mCherry was amplified by PCR, and subcloned into the EcoRI site of pT2A-BItight-TRE by In-Fusion ® HD cloning kit (TaKaRa). pT2A-BItight-Lifeact-mCherry-TRE: Lifeact-mCherry was amplified by PCR using pT2A-BI-TRE-LAP2bcGFP-Lifeact-mCherry as a template, and subcloned into the MluI-EcoRV site of pT2A-BItight-TRE. pT2A-CAGGS-EGFP-CAAX-IRES2-PuroR: The sequences of IRES2 and PuroR were amplified by PCR, and subcloned into the XhoI-EcoRI site and EcoRI-BglII site into pT2A-CAGGS, respectively. ..

    Article Title: H3.3 G34R-engineered murine glioma reproduces diffuse perineuronal infiltration of diffuse hemispheric glioma, H3 G34-mutant.
    Article Snippet: A plasmid containing the fully sequenced mouse H3f3a cDNA (Accession: BC106177, Clone ID: 6511787) was purchased from GE Healthcare Dharmacon Inc. Site-directed mutagenesis was performed using primers incorporating the H3f3a-G34R mutation (GGG→CGG: Gly (G)→Arg(R; Fig. 1A). .. The mutant cDNA was amplified by PCR and ligated into the EcoRI site using the InFusion HD cloning kit (Clontech) according to the manufacturer's instructions. .. Male BALB/c nude mice (6–8 weeks old) were purchased from Charles River Japan (Yokohama, Japan).

    Article Title: Treatment of atypical hemolytic uremic syndrome and C3 glomerulopathy in mice by hepatic expression of factor D
    Article Snippet: Human and mouse pro- FD cDNAs were obtained from OriGene (catalog no. SC11950) and Sino Biological (catalog no. MG50539-M), respectively. .. Mature human and mouse FD cDNA was amplified by polymerase chain reaction with the respective pro- FD cDNA as a template., The various FD cDNAs were cloned into the pCAGGS vector at the EcoRI site through the infusion cloning method (kit from Takara). ..

    Mutagenesis:

    Article Title: Bleb-based extravasation: conserved morphodynamics, divergent calcium control
    Article Snippet: .. The full-length of EGFP was amplified by PCR, and subcloned into the EcoRI-PstI site of pT2A-BItight-TRE. pT2A-BItight-EGFP-TRE-Orai1 E106Q: The ORF of human Orai1 with E106Q mutation and myc tag (addgene #22754) was amplified by PCR, and subcloned into the MluI-EcoRV site of pT2A-BItight-EGFP-TRE. pT2A-BItight-mCherry-TRE: The full-length of mCherry was amplified by PCR, and subcloned into the EcoRI-BglII site of pT2A-BItight-TRE. pT2A-BItight-GCaMP6s-2AP-mCherry-TRE: The consecutive sequences of GCaMP6s-2AP-mCherry was amplified by PCR, and subcloned into the EcoRI site of pT2A-BItight-TRE by In-Fusion ® HD cloning kit (TaKaRa). pT2A-BItight-Lifeact-mCherry-TRE: Lifeact-mCherry was amplified by PCR using pT2A-BI-TRE-LAP2bcGFP-Lifeact-mCherry as a template, and subcloned into the MluI-EcoRV site of pT2A-BItight-TRE. pT2A-CAGGS-EGFP-CAAX-IRES2-PuroR: The sequences of IRES2 and PuroR were amplified by PCR, and subcloned into the XhoI-EcoRI site and EcoRI-BglII site into pT2A-CAGGS, respectively. ..

    Article Title: H3.3 G34R-engineered murine glioma reproduces diffuse perineuronal infiltration of diffuse hemispheric glioma, H3 G34-mutant.
    Article Snippet: A plasmid containing the fully sequenced mouse H3f3a cDNA (Accession: BC106177, Clone ID: 6511787) was purchased from GE Healthcare Dharmacon Inc. Site-directed mutagenesis was performed using primers incorporating the H3f3a-G34R mutation (GGG→CGG: Gly (G)→Arg(R; Fig. 1A). .. The mutant cDNA was amplified by PCR and ligated into the EcoRI site using the InFusion HD cloning kit (Clontech) according to the manufacturer's instructions. .. Male BALB/c nude mice (6–8 weeks old) were purchased from Charles River Japan (Yokohama, Japan).

    Article Title: Transcriptional adapter ADA2 regulates yield and end-use quality through liquid-liquid phase separation in wheat.
    Article Snippet: .. The full‐length GCN5, along with the introduced mutation and some domain deletions, was cloned into the EcoRI site of the pGBKT7 vector (Takara, Dalian, China), while the full‐length ADA2, along with the introduced mutation and some domain deletions, was cloned into the EcoRI site of the pGADT7 vector (Takara, Dalian, China). .. Different combinations of the plasmids were transformed into yeast strain Y2HGold (WEIDIBIO, YCL1002, Shanghai, China), and the cells were grown on minimal medium (−Leu/−Trp) (Coolaber, PM2222, Beijing, China) at 30°C for 2 d according to the manufacturer's instructions (WEIDIBIO, Shanghai, China).

    Construct:

    Article Title: Direct binding of chromosome axis and cohesin complexes underlies meiotic chromosome architecture in fungi and plants
    Article Snippet: For yeast two-hybrid assays with A. thaliana proteins, A. thaliana ASY3 fragments were PCR-amplified and cloned into the NdeI site of pGADT7 (Clontech # 630442) via isothermal assembly to generate activation domain (AD) fusions. .. The SMC1(head) construct (residues 1-181 and 1030-1218 of A. thaliana SMC1 fused by a GSGSASAG linker) was synthesized by IDT and cloned into the EcoRI site of pBridge (Clontech # 630404) via isothermal assembly to generate a binding domain (BD) fusion. ..

    Article Title: FHL2 fused with biotin ligase shuttles between focal adhesions and the nucleus in a myosin II-dependent manner
    Article Snippet: .. Plasmids: To generate pPB-CAG-FHL2-GFP-BirA construct, FHL2-GFP cDNA (Nakazawa et al. 2016) and BirA cDNA (Guo et al. 2014) were recombined into the EcoRI site in pPB-LR5-Core2-CAG-HA-N1-Core2 plasmid vector using In-Fusion cloning (Takara) (Fujita et al. 2020). ..

    Article Title: Direct binding of chromosome axis and cohesin complexes underlies meiotic chromosome architecture in fungi and plants
    Article Snippet: For yeast two-hybrid assays with M. musculus proteins, M. musculus SYCP2 fragments were PCR-amplified and cloned into the NdeI site of pGADT7 (Clontech # 630442) via isothermal assembly to generate activation domain (AD) fusions. .. The SMC1(head) construct (residues 2-169 and 1056-1217 of M. musculus SMC1β fused by a GSGSASAG linker) was synthesized by IDT and cloned into the EcoRI site of pBridge (Clontech # 630404) via isothermal assembly to generate a binding domain (BD) fusion. .. Subsequently, the RAD21L C-WHD domain (residues 457-550) or REC8 C-WHD domain (residues 521-591) was synthesized by IDT and cloned into the BglII site of the same vector. pBridge (BD) and pGADT7 (AD) plasmids were transformed into S. cerevisiae strains Y187 ( MATα ) and AH109 ( MATa ), respectively, and transformants were selected on CSM-TRP (for BD plasmids) and-LEU (for AD plasmids) agar plates at 30°C for 3-5 days.

    Synthesized:

    Article Title: Direct binding of chromosome axis and cohesin complexes underlies meiotic chromosome architecture in fungi and plants
    Article Snippet: For yeast two-hybrid assays with A. thaliana proteins, A. thaliana ASY3 fragments were PCR-amplified and cloned into the NdeI site of pGADT7 (Clontech # 630442) via isothermal assembly to generate activation domain (AD) fusions. .. The SMC1(head) construct (residues 1-181 and 1030-1218 of A. thaliana SMC1 fused by a GSGSASAG linker) was synthesized by IDT and cloned into the EcoRI site of pBridge (Clontech # 630404) via isothermal assembly to generate a binding domain (BD) fusion. ..

    Article Title: Direct binding of chromosome axis and cohesin complexes underlies meiotic chromosome architecture in fungi and plants
    Article Snippet: For yeast two-hybrid assays with M. musculus proteins, M. musculus SYCP2 fragments were PCR-amplified and cloned into the NdeI site of pGADT7 (Clontech # 630442) via isothermal assembly to generate activation domain (AD) fusions. .. The SMC1(head) construct (residues 2-169 and 1056-1217 of M. musculus SMC1β fused by a GSGSASAG linker) was synthesized by IDT and cloned into the EcoRI site of pBridge (Clontech # 630404) via isothermal assembly to generate a binding domain (BD) fusion. .. Subsequently, the RAD21L C-WHD domain (residues 457-550) or REC8 C-WHD domain (residues 521-591) was synthesized by IDT and cloned into the BglII site of the same vector. pBridge (BD) and pGADT7 (AD) plasmids were transformed into S. cerevisiae strains Y187 ( MATα ) and AH109 ( MATa ), respectively, and transformants were selected on CSM-TRP (for BD plasmids) and-LEU (for AD plasmids) agar plates at 30°C for 3-5 days.

    Binding Assay:

    Article Title: Direct binding of chromosome axis and cohesin complexes underlies meiotic chromosome architecture in fungi and plants
    Article Snippet: For yeast two-hybrid assays with A. thaliana proteins, A. thaliana ASY3 fragments were PCR-amplified and cloned into the NdeI site of pGADT7 (Clontech # 630442) via isothermal assembly to generate activation domain (AD) fusions. .. The SMC1(head) construct (residues 1-181 and 1030-1218 of A. thaliana SMC1 fused by a GSGSASAG linker) was synthesized by IDT and cloned into the EcoRI site of pBridge (Clontech # 630404) via isothermal assembly to generate a binding domain (BD) fusion. ..

    Article Title: Direct binding of chromosome axis and cohesin complexes underlies meiotic chromosome architecture in fungi and plants
    Article Snippet: For yeast two-hybrid assays with M. musculus proteins, M. musculus SYCP2 fragments were PCR-amplified and cloned into the NdeI site of pGADT7 (Clontech # 630442) via isothermal assembly to generate activation domain (AD) fusions. .. The SMC1(head) construct (residues 2-169 and 1056-1217 of M. musculus SMC1β fused by a GSGSASAG linker) was synthesized by IDT and cloned into the EcoRI site of pBridge (Clontech # 630404) via isothermal assembly to generate a binding domain (BD) fusion. .. Subsequently, the RAD21L C-WHD domain (residues 457-550) or REC8 C-WHD domain (residues 521-591) was synthesized by IDT and cloned into the BglII site of the same vector. pBridge (BD) and pGADT7 (AD) plasmids were transformed into S. cerevisiae strains Y187 ( MATα ) and AH109 ( MATa ), respectively, and transformants were selected on CSM-TRP (for BD plasmids) and-LEU (for AD plasmids) agar plates at 30°C for 3-5 days.



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